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Providing For Our Brave New World

By | Blog, Future Directions
The Journal of Experimental Botany (JXB) published a special issue in June entitled ‘Breeding plants to cope with future climate change’

The Journal of Experimental Botany (JXB) published a special issue in June entitled ‘Breeding plants to cope with future climate change

By Jonathan Ingram

The Journal of Experimental Botany (JXB) recently published a special issue entitled ‘Breeding plants to cope with future climate change’.

More often than not, climate change discussions are focused on debating the degree of change we are likely to experience, unpredictable weather scenarios, and politics. However, regardless of the hows and whys, it is now an undeniable fact that the climate will change in some way.

This JXB special issue focuses on the necessary and cutting edge research needed to breed plants that can cope under new conditions, which is essential for continued production of food and resources in the future.

The breadth of research required to address this problem is wide. The 12 reviews included in the issue cover aspects such as research planning and putting together integrated research programs, and more specific topics, such as the use of traditional landraces in breeding programs. Alongside these reviews, original research addresses some of the key questions using novel techniques and methodology. Critically, the research presented comes from a diversity of labs around the world, from European wheat fields to upland rice in Brazil. Taking a global view is essential in our adaptation to climate change.

Avoiding starvation

Why release this special issue now?

Quite simply, the consequences of an inadequate response to climate change are stark for the human population. In fact, as previously discussed on the Global Plant Council blog, changing climate and extreme weather events are already having an impact on food production. For example, drought in Australia (2007), Russia (2010) and South-East China (2013) all resulted in steep increases in food prices. However, a positive side effect of this was to put food security at the top of the global agenda.

A farm in China during drought. Reduced food production can cause steep rises in food prices leading to socio-economic problems.  Photo credit: Bert van Dijk used under Creative Commons License 2.0

A farm in China during drought. Reduced food production can cause steep rises in food prices leading to socio-economic problems.
Photo credit: Bert van Dijk used under Creative Commons License 2.0

Moving forwards, researchers and breeders alike will have to change their fundamental approach to developing novel varieties of crops. In the past, breeders have been highly succesful in increasing yields to feed a growing population. However, we now need to adapt to a rapidly changing and unpredictable environment.

Dr Bryan McKersie sums this up in his contribution to the special issue. He commented: “Current plant breeding methods use large populations and rigorous selection in field environments, but the future environment is different and does not exist yet. Lessons learned from the Green Revolution and development of genetically engineered crops suggest that a new interdisciplinary research plan is needed to achieve food security.”

Driving up yields

So which traits should we be studying to increase resilience to climate change in our crops?

A potentially important characteristic brought to the foreground by Dr Karine Chenu and colleagues (University of Queensland, Australia) is susceptibility to frost damage. Although seemingly counterintuitive at first, the changing climate could result in greater frost exposure at key phases of the crop lifecycle. Warmer temperatures, or clear and cool nights during a drought, would allow vulnerable tissue to emerge earlier in the spring (Gu et al., 2008; Zheng et al., 2012). A late frost could then be incredibly destructive to our agricultural systems, causing losses of up to 85% (Paulsen and Heyne, 1983; Boer et al., 1993).

As explained by Dr Chenu, “Finding frost tolerant lines would thus help to deal with frost damage but also with losses due to extreme heat and drought – as they could be avoided by earlier sowings”.

The authors conclude that a “national yield advantage of up to 20% could result from the breeding of frost tolerant lines if useful genetic variation can be found”. The impact of this for future agriculture is incredibly exciting.

This study is just one illustration of the importance of thinking outside the box and investigating a wide range of traits when looking to adapt crops to climate change.

You can find the full Breeding plants to cope with future climate change Special Issue of Journal of Experimental Botany here. Much of the research in the issue is freely available (open access).

Journal of Experimental Botany publishes an exciting mix of research, review and comment on fundamental questions of broad interest in plant science. Regular special issues highlight key areas.

References

Association of Applied Biologists. 2014. Breeding plants to cope with future climate change. Newsletter of the Association of Applied Biologists 81, Spring/Summer 2014.

Boer R, Campbell LC, Fletcher DJ. 1993. Characteristics of frost in a major wheat-growing region of Australia. Australian Journal of Agricultural Research 44, 1731–1743.

Gu L, Hanson PJ, Post WM et al. 2008. The 2007 Eastern US spring freeze: increased cold damage in a warming world? BioScience 58, 253–262.

Paulsen GM, Heyne EG. 1983. Grain production of winter wheat after spring freeze injury. Agronomy Journal 75, 705–707.

Zheng BY, Chenu K, Dreccer MF, Chapman SC. 2012. Breeding for the future: what are the potential impacts of future frost and heat events on sowing and flowering time requirements for Australian bread wheat (Triticum aestivum) varieties? Global Change Biology 18, 2899–2914.

Nanopores: Next, next generation sequencing

By | Blog, Future Directions

Do you have a genome sequencer in your pocket or are you just happy to see me?

By Nikolai Adamski

On September 4 I attended an event sponsored by Oxford Nanopore Technologies (ONT) at Norwich Research Park, UK, which focused on nanopore technologies. This new technology has been dubbed ‘Next, next-generation sequencing’, and could have really exciting implications for the future of genome sequencing.

ONT has developed a pocked-sized genome sequencing device called the MinION that can sequence genomes in real time. Thanks to recent pop culture this generates visions of cuddly yellow creatures with an overly developed desire to serve super-villains. However, a MinION is actually a new genome sequencing device. To help confused readers, the figure below should help clarify the issue once and for all (Figure 1).

Figure 1: Demonstrating the difference between the pop culture Minion on the left and the genome sequencing MinION on the right.

Figure 1: Demonstrating the difference between the pop culture Minion on the left and the genome sequencing MinION on the right.

The striking thing about the MinION is its size. Sequencing machines these days vary in size from something that sits on a desktop, to something that fills half a student’s room. The MinION however, fits in the palm of your hand. This is possible thanks to highly miniaturized electronics.

So how does it work?

At the core of the MinION are two biological components: the nanopore protein, which gives the company its name, and a motor protein. The nanopore protein sits on top of an artificial layer and acts a microscopic sluice gate that controls how much of the sample solution passes through it into the lower layer. The sample solution contains DNA, but also ions that pass through the nanopore, thus creating a measurable electrical current. If a big molecule like a strand of DNA passes through the nanopore, the flow of ions is perturbed, which results in a change in the electrical current. These changes are recorded and interpreted to give the sequence of said DNA molecule.

Meanwhile, the motor protein sticks to a DNA molecule, attaches itself to the top of the nanopore, and feeds the DNA through the nanopore as a single strand at a certain speed. This process is similar to a ratchet. Each MinION device has thousands of nanopores allowing for as many molecules to pass through and be sequenced in real time. This is nicely illustrated in a video made by ONT, which you can see here which is well worth a watch!

The sequence data are sent to a cloud server in real time, where they are transformed and analyzed and the final data sent back to the user. This eliminates the need for an expensive computer infrastructure as well as the need for extensive training in bioinformatics.

Limitations of the technology

So far so good, but there are still some issues with the MinION system. One of these is the average length of the DNA molecules that can be sequenced. In theory, the MinION system is able to sequence DNA molecules of any length, although the data from users at last week’s event suggests that, at the moment, the average length of sequence obtained is around 6,000 base pairs (bp). This is still a great value, but there is room for improvement. Another issue is the amount of data generated by a single MinION run, which according to user experience is generally around 1Gb, approximately 200 times the size of the gut bacterium E. coli. Both of these issues can be easily remedied by running several MinION sequencers with the same sample.

A larger problem is the matter of sequencing accuracy, which is now somewhere around 90%, although it can be as low as 75%. This can in part be compensated for by the sheer amount of data generated. However, it would require a lot of sequencing to make up for these mistakes, and is a critical point that needs to be addressed by ONT in the future.

Current applications

The MinION system has been and is being used worldwide for a number of different applications. Scientists and medical doctors have used the MinION to monitor strains of the Ebola virus in different patients. Thanks to the real time sequencing data and cloud-based data analysis, patients could be screened within a few days as opposed to weeks. Another interesting example of the usefulness of the MinION system was when scientists travelled to the Tanzanian jungle to assess the biodiversity of frogs in the region.

There are many more fascinating applications for the MinION sequencer. Scientists who are interested can join the MinION Access Programme (MAP) to become part of the research and development community.

I very much enjoyed the ONT event and I am hopeful and curious about what the next few years will bring in terms of innovation and development.

______________________________________________________________________________________________________________________________________

About the Author:

nikolaiadamskiNikolai Adamski is a postdoctoral scientist working at the John Innes Centre in Norwich, UK, in the group of Cristobal Uauy. He studies yield and yield-related traits in wheat, trying to identify the underlying genes to understand the control and regulation of these traits.

 

You can follow him on Twitter @NikolaiAdamski

 

 

A Postcard From… The Argentinean Society of Plant Physiology (SAFV)

By | Blog, GPC Community, SAFV

Professor Edith Taleisnik

This week Professor Edith Taleisnik describes the vision and activities of the Argentinean Society of Plant Physiology (SAFV), a Member Organization of the Global Plant Council dedicated to promoting collaboration in plant science within Argentina, across Latin America and beyond.

SAFV member Dr Constanza Carrera drinks mate, an infusion made from leaves of Ilex paraguariensis, which is very popular in Argentina, Uruguay and southern Brazil.

SAFV member Dr Constanza Carrera drinks mate, an infusion made from leaves of Ilex paraguariensis, which is very popular in Argentina, Uruguay and southern Brazil.

The Argentinean Society of Plant Physiology (Sociedad Argentina de Fisiologia Vegetal; SAFV) was founded in 1958 to nucleate researchers and teachers in plant physiology in Argentina. Since then the SAFV has maintained continuous activity in the country and the region, providing opportunities for the dissemination and exchange of information related to plant function. It has about 350 members, mostly from Argentina and also from neighboring Uruguay. The SAFV is linked with the Global Plant Council and many other important international plant science organizations.

Exchanging ideas in Argentina and beyond

29th SAFV meeting

The 29th SAFV meeting

One of the main objectives of the society is to organize meetings, which are held every two years. The last one was held in Mar del Plata, and was attended by nearly 600 people. The SAFV has close ties with the Brazilian Society of Plant Physiology (BSPP), so every other SAFV meeting is a joint Latin American event in association with the BSPP. These meetings provide a unique opportunity for scientists in the area to meet, analyze and exchange views on the future of this field, to plan for joint efforts and enterprises, to share personal experiences and contribute to a regional and global perspective of local endeavors.

The participation of students and young scientists in SAFV meetings is stimulated by invitations to deliver lectures and organize symposia, and by making available fellowships that cover travel and registration costs. In accordance with its mandate to promote and diffuse knowledge in plant science, the SAFV also organizes and sponsors courses and workshops.

Conversations with keynote speakers

Keynote speaker discussions at an SAFV meeting

Poster sessionPlant science, and plant physiology in particular, has experienced steady growth and development in Argentina, reflecting the importance of agriculture in its broadest sense; pastures and forests for the Argentine economy. Established groups all over the country produce novel data on various aspects of plant function and interaction with other organisms and the environment, which is particularly relevant to local and global crop production. The wide range of this work is reflected in the proceedings of the last plant physiology meeting.

Other Argentinian plant science societies

There are several other plant science societies in Argentina. Scientists working on botanical and morphological topics are affiliated to the Sociedad Argentina de Botánica (SAB). The focus of the members of the Asociación Argentina de Ecología (AsAE) is centered in environmental topics. A more recently formed society, the Asociación Argentina de Fitopatólgos (AAF), is dedicated to plant pathology, while the Sociedad Argentina de Investigación Bioquímica y Biología Molecular (SAIB) features a section specifically devoted to plant biochemistry and molecular biology. All of these societies hold periodical meetings, stimulate the work of young scientists through incentives and prizes, and publish journals (e.g. Ecología Austral) and books.

Get in touch

If you’d like to know more about the work of the SAFV, or how you can get involved with the society, have a look at their website, or get in touch via Facebook or Twitter (@fisiovegetal).


About the author

Edith TaleisnikProfessor Edith Taleisnik researches the physiology of plants under saline stress for the Argentinean National Scientific and Technical Research Council (CONICET), and is based at the Instituto de Fisiologia y Recursos Geneticos Vegetales  (IFRGV) CIAP, INTA, Argentina. Edith was the president of the SAFV from 2000 to 2004, and is now a member of the scientific committee.

Plant Biology Scandinavia 2015

By | Blog, GPC Community, Scandinavian Plant Physiology Society, Scientific Meetings
Celia Knight and Saijaliisa Kangasjarvi at the conference dinner

Celia Knight and Saijaliisa Kangasjarvi at the conference dinner

The 26th Scandanavian Plant Physiology Society (SPPS) Congress took place from the 9th – 13th August at Stockholm University. Celia Knight attended the meeting and has written a report for the blog this week, so that those of you who couldn’t attend are up to speed!

A diversity of speakers and topics

Attending SPPS 2015 was a fantastic opportunity to hear about progress across a really broad spectrum of plant biology research. The program included sessions on development, epigenetics and gene regulations, high-throughput biology, photobiology, abiotic stress, education and outreach, and biotic interactions. There really was something for everyone! Additionally, the organizers had made a notable effort to include a good mix of both established and early career researchers, further adding to the diversity of talks on offer.

I was struck by the contributions from the various Society awards so will focus on these.

Beautiful Stockholm where the meeting was held

Beautiful Stockholm where the meeting was held

SPPS awards

Gunnar Öquist (Umeå University, Sweden) was given the SPPS Award in recognition of his outstanding merited contribution to the science of plant biology. His talk entitled “My view of how to foster more transformative research” provided a reminder that the dual aims of research, both to solve problems and to seek new knowledge, are very important if global challenges are to be met.

The SPPS early career award recognizes a highly talented scientist who has made a significant contribution to Scandinavian plant biology. This year two early career awards were given. The first recipient, Ari-Pekka Mähönen (University of Helsinki, Finland), received the award for his work on growth dynamics in Arabidopsis thaliana, and showed some amazing sections to follow cambium development. Nathaniel Street (Umeå University, Sweden) also received an award for his work “Applying next generation sequencing to genomic studies of Aspen species and Norway Spruce”. Both gave great talks including strong research in these areas; it was great to see upcoming researchers take the spotlight and give us a glimpse to the future of plant biology.

Torgny Näsholm (SLU, Umeå Sweden) was awarded the Physiologia Plantarum award. This award is given to a scientist that has made significant contribution to the areas of plant science covered by the journal Physiologia Plantarum. Torgny uses microdialysis, a technique currently used by neuroscientists, to investigate the availability of soil nitrogen to plants. Data generated using this technique are now bringing into question our current view of nitrogen availability measured using traditional methods.

Additional activities included a tour of the Bergius Botanic Garden

Additional activities included a tour of the Bergius Botanic Garden

The Popularisation prize, awarded to Stefan Jansson (Umeå University, Sweden), recognizes significant contributions to science communication and public engagement. Stefan’s work in public engagement has been wide-ranging. He has been involved with The Autumn Experiment, a citizen science project engaging schools in observation, data collection and real research. Recently Stefan published a book in Sweden, called ‘GMO’, which tackles the response of societies to genetically modified organisms.

At the congress, Stefan took over as the new President of the SPPS. This could lead to further emphasis and resources being placed on communicating science as the society moves forward.

Poster prizes

Prizes for the best posters are also awarded at the meeting. Five judges, including myself, assessed the posters, and the competition was fierce. It was impossible to split the top prize, so joint 1st prizes were awarded to Veli Vural Uslu (Heidelberg University, Germany) on “Elucidating early steps of sulfate sensing mechanisms by biosensors” and to Timo Engelsdorf (Norwegian University of Science and Technology, Norway) for “Plant cell wall integrity is maintained through cooperation of different sensing mechanisms”. Joint second prizes went to Zsofia Stangl (Umeå University, Sweden) on “Nutrient requirement of growth in different thermal environments” and to Annika Karusion (University of Tartu, Estonia) for “Circadian patterns of hydraulic and xylem sap properties: in situ study on hybrid aspen.”

Additional activities

Like any meeting, SPPS wasn’t all work and no play! Lisbeth Jonsson (Stockholm University, Sweden) and her team organized an excellent program. I feel very fortunate, on this short trip, to have had the opportunity to view Stockholm’s fine City Hall where Nobel laureates have dined, as well  as the incredibly preserved Vasa ship, which sank in Stockholm bay on its maiden voyage in 1628.

I very much look forward to seeing how the society progresses in the future, and nurturing new friendships and collaborations I made at the congress.

The Drinks reception at the City Hall, walking in the footsteps of Nobel Laureates

The Drinks reception at the City Hall, walking in the footsteps of Nobel Laureates

Plant Biology 2015: Introducing Plantae.org

By | ASPB, Blog, Future Directions, GPC Community, Plantae, Scientific Meetings, SEB
Minneapolis skyline. Photo by 'zman z28', Flickr, used under a CC BY-NC-ND 2.0 license.

Minneapolis skyline. Photo by ‘zman z28’, Flickr, used under a CC BY-NC-ND 2.0 license.

Ruth and I recently flew out to Minneapolis, Minnesota, USA, to attend the American Society of Plant Biologists’ (ASPB) annual conference, Plant Biology 2015.

Ruth did a sterling job of live-tweeting the scientific sessions she attended. She also spent some time stationed at the ASPB booth to talk to people about the Global Plant Council (GPC), as well as a big project we’re helping to bring to life: Plantae.org. I’ll talk more about what I did at the conference later… But first, what is Plantae.org?

The Evolution of Plantae.org

Some time ago, here at the GPC, we thought it would be a great idea if there was one, online location where plant scientists and teachers could go to look for and share new ideas, tools and resources for research and education. We tentatively called it the ‘Plant Knowledge Hub’, and set about looking for people or organizations that might be able to help us make it a reality.

In doing so, we discovered that the ASPB was interested in creating a kind of community networking and collaboration platform, for which they had the working title ‘Plant Science Exchange’. Joining forces, we decided to combine the two ideas into one big portal, now called ‘Plantae’. Extending beyond the ASPB membership, Plantae will be for plant scientists and educators all over the world. We hope it will become the leading plant science resource hub and community gathering place.

Lisa modeling her Plantae t-shirt!

Lisa modeling her Plantae t-shirt!

At this point, I should also mention the Society for Experimental Biology (SEB), without whose help the GPC would not have been able to move forward with this project. The SEB generously provided enough funding for my post! I joined the GPC in February as the Outreach & Communications Manager, so as well as looking after the GPC’s internal and external communications and helping to spread the word about the work of the GPC, one of my main duties is to identify and curate tools, resources and plant science information to upload to Plantae.

Building Plantae.org

I’ve made a few simple websites in the past, but nothing as complicated as an entire ‘digital ecosystem’ so taking the ‘Plant Science Knowledge Exchange Hub’ from an idea to the reality of Plantae.org was going to be a mammoth task. Fortunately we have had a lot of help!

Susan Cato, the ASPB’s Director of Member Services and Digital Marketing, and her team, have been doing a stellar job of pulling different stakeholder groups together to build and develop the Plantae platform. As well as a group of web architects to build the portal’s infrastructure, an agency called LookThink has been involved, with the unenviable task of optimizing the user experience. It’s no mean feat to take our ideas about what the platform should do, and the practicalities of how it can be built, to ensure that the final online product actually does what users want and need it to do in an intuitive, user-friendly way!

Ultimately, Plantae.org will have features such as Facebook or LinkedIn-style user profiles and groups, with the ability to ‘connect’, interact and send private messages. It will have public and private discussion boards where scientists can collaborate, talk about issues in science, or ask questions to the community and have them answered. It will eventually contain hundreds and thousands of pages of content including research papers, teaching resources, videos, posters and much more, some of which will be curated by groups like the GPC, and others uploaded directly by members. Underlying all of this, the portal needs a robust, intuitive search engine to allow users to find exactly the contact they are looking for.

User Testing the Beta Version

PlantBiology2015logoSo during the ASPB conference, I was to be found in a meeting room with Clare Torrans from LookThink, helping her to conduct some user experience analysis on an early beta version of the Plantae site. We recruited a range of potential Plantae users – from students through to senior professors – and asked them to tell us what they thought of the idea of Plantae, whether they would use it and find it useful, whether the icons, buttons and links on the screen did what they expected, and what else they would like Plantae to do.

I’d never consciously considered the ‘user experience’ of a website before, but having spent time with Clare, I now realize it’s a vital part of the build process – and now I’m analyzing every website I visit!

The feedback we received was varied: there were some clear patterns related to age, academic level, or previous experience with social media, some people pointed out elements of the site I hadn’t even noticed, or misinterpreted buttons I’d thought were obvious, but – positive or negative – all of the feedback we received was useful and will be fed back into the site development process.

When can I start using Plantae?

The site isn’t quite ready yet, but taking into account all of the data we obtained from the user testing sessions at Plant Biology 15, we will hopefully be ready for launch in the Autumn. Watch this space for more news!

James Wong: Plant Geeks Will Save The World!

By | Blog, Interviews

James Wong trained as a botanist at Kew Gardens in London, UK, before embarking on a wide and varied career encompassing broadcasting, writing and garden design. He demonstrates his passion for plants in every strand of his work, and is making a significant contribution towards raising the profile of horticulture and the plant sciences within the UK. He took some time out of his busy schedule to speak to Amelia at the Global Plant Council.

james wongJames qualified with a Masters in Ethnobotany; the study of how people use plants, in 2006. This branch of the plant sciences is very relevant to tackling pressing issues such as food security and conservation.

Plants have provided humanity with essentially every aspect of our sustenance and material culture for millennia. Being a fusion of anthropology and botany, ethnobotany is vital to understanding everything we are and everything we do.

 Humanity relies on an incredibly narrow range of plants to meet its needs, with just 3 crops providing up to 50% of our sustenance. This means civilization has pinned its future on just 0.00006% of the world’s edible plants!

With threats like climate change and a growing global population, it is simply not feasible to continue to marginalise 99.99994% of our crops. Learning about how to grow, prepare and eat those other plants is where the work of ethnobotanists is vital.

 This is just one example of how ethnobotany is essential in helping combat some of the biggest threats our species are facing in the next century. Plant geeks will indeed save the world.

To meet the needs of a growing population, many resources are currently focused on grow for flavourincreasing productivity of our large scale farming systems. However, in his most recent book, Grow for Flavour, James explores how we can increase the nutritional quality of home-grown produce. Could small-scale food production such as personal allotments or gardens have any role to play in our future food production systems?

In short, no. My tiny urban garden is just 6x6m, and there is no way that it is ever going to make a significant contribution to my calorie intake.

However (and this is a big however), even in this tiny space I can get access to a range of fruit and vegetables that could make an important contribution towards certain micronutrients in my diet. Many of these, including key phytonutrients, are not found in the limited range of crops grown commercially, at least in large quantities.

Green Zebra tomatoes are a good source of tomatidine.  Photo credit: J https://www.flickr.com/photos/florence_craye/2953736794/in/photolist-5v1F3s-6Pshmn-8 Used under a CC BY-NC-ND 2.0 license.

Green Zebra tomatoes are a good source of tomatidine.
Photo credit: J  Used under a CC BY-NC-ND 2.0 license.

For example tomatidine, a chemical found in green tomatoes, may help improve muscle tone and reduce atrophy according to some studies. It is not really found in any supermarket produce, yet I can easily grow 10 kgs of tasty, tomatidine-rich fruit like ‘Green Zebra’ each summer. Popped in the freezer they could provide me with an important source of this phytonutrient year round that would otherwise be almost totally absent in my diet.

Home gardens can make significant financial sense too, removing cost as a barrier to nutrient availability.

The garden design studio, Amphibian Designs, was co-founded by James in 2008. I have always been fascinated by plants and I feel that designing with them helps me express that.” This fascination has led the studio to win four Royal Horticultural Society medals for its designs, including two gold medals at the Chelsea Flower Show. Gardening is perhaps something we might associate more with art and creativity than science. However, James finds that: creating spaces with plants and arranging them to express an idea allows me to better understand their botany.” Furthermore, having a scientific rather than arts background can be advantageous in design.

 I have no formal design training and find this actually allows me more creative freedom! I rarely know the design rules and conventions, so I don’t feel I need to slavishly devote my works to them. There is an awful lot of assumed knowledge and entrenched ideas in horticulture, much of which has no factual basis, and being an outsider means you get to circumvent all that.

Engaging the public with the plant sciences is becoming increasingly important yet the perception that plants are boring can be difficult to overcome. Could gardens and horticulture provide a way to approach this problem?

Absolutely. Humans instinctively find plants beautiful. Sadly, I do think UK horticulture has done a rather good job of suppressing this instinct in many people by holding up a singular, historical ideal as the dominant mode of what a ‘proper’ garden should be. Between the rustic woven willow and stately home symbolism, it can be very easy for many people (like me) to not associate themselves with gardening. Would food, fashion, music, art or film limit themselves to such as singular ideal? Of course not, and that explains their far more broad-based appeal.

 One of the most popular stands I saw at Chelsea Flower Show this year was for the European Space Agency, and represented how plants would be grown in space to feed astronauts and fuel interplanetary discovery. The look of wonder in faces of the kids (of all ages) as they wandered through spoke volumes. What an amazing way to engage kids with science.

So, we can’t leave without asking one final question: any tips for the budding gardeners amongst our readers?

Plants always grow and look best when planted to echo how they would naturally grow in the wild. Doing so means you will have less work, healthier plants and a perfectly matching aesthetic almost every time. Google image your favourite plants in their wild habitat and try your best to match them. The rest will take care of itself!

An interview with Ellen Bergfeld

By | Blog, GPC Community, Interviews

EllenBergfeldThis week, New Media Fellow Amelia Frizell-Armitage has been talking to Ellen Bergfeld, CEO of the Alliance of Crop, Soil and Environmental Science Societies (ACSESS), a coalition of the American Society of Agronomy (ASA), Crop Science Society of America (CSSA) (both of which are Global Plant Council member organisations) and the Soil Science Society of America (SSSA). She spoke to us about the societies, her role as CEO, and her visions for the future.

What is the purpose of the ACSESS?

ACSESS is a nonprofit organization founded by the ASA, CSSA and SSSA to support the activities of member societies.

ACSESS has five primary goals. 1) Firstly, we help professional societies representing agronomic, crop, soil, and environmental sciences to collaborate and 2) advance the missions, visions, and activities of these societies. 3) We promote the value and image of agronomic, crop, soil and environmental resource professions, and 4) unify communication with scientists, educators, policy-makers, and the public to enhance impact. Finally, 5) we engage science-based knowledge on the challenges facing humanity.

How do the work and aims of the ACSESS coalition cross over with those of the Global Plant Council (GPC)?

The GPC’s goal to feed an ever-growing human population sustainably is of paramount interest and importance to all three of our member societies.

Additionally, all three societies advocate nationally and internationally for plant and crop sciences. They act as catalysts to generate plant-based solutions for the sustainable intensification of agriculture, whilst preserving biodiversity, protecting the environment, reducing world hunger, and improving human health and wellbeing.

In your opinion, what will be the biggest challenges over the next 50 years in terms of food production and agriculture?

Three things: climate change, degraded and decreased natural resources, and population growth.

What do you think our top priorities should be in terms of tackling these issues?

Adapting plants to climatic changes and developing crops that can be sustainably grown in the field is a top priority, and very broad in terms of the research required.

Another large gap I see is education and science literacy. By educating and empowering communities, particularly girls and women, regarding the carrying capacity of the planet, we can open up discussions and raise awareness of the need for sustainability in all aspects of our lives.

What are the key developments in agronomy required to ensure sustainable agriculture in the future?

If we continue to deplete our soil and water resources, this will have a dire impact on our ability to feed the population. We need to recognize this, and adapt our agricultural practices accordingly.

2015 is International Year of Soils. Can you sum up in one sentence why soils are so important?

 Soils Sustain Life!

What inspired you to leave academia and move into science policy, strategy and administration?

At the time I was looking to graduate, I would have had to do multiple postdocs to be competitive for an academic position. I enjoyed the teaching and working with animals, but not the lab work or grant writing.  I pursued the Congressional Science Fellowship to open new doors and took advantages of the opportunities that followed.

Day to day, what is the most rewarding part of your job as CEO?

I enjoy connecting our sciences, and scientists, to address the global challenges that we face.

Interacting with the best and brightest minds who are collectively addressing these challenges is incredibly inspiring and fulfilling.

Ellen Bergfeld received her BSc in Animal Science from Ohio State University, going on to study reproductive physiology, first at masters then PhD level, at the University of Nebraska-Lincoln.  After graduating she was awarded the Federation of Animal Science Societies Congressional Science Fellowship. This Fellowship provides an opportunity for highly skilled scientists to spend a year working in congress as special assistants in legislative areas. Following the fellowship Ellen became Executive Director of the American Society of Animal Science. Ellen is now CEO of ACSESS.

Get a new view: attend an interdisciplinary conference

By | Blog, Scientific Meetings

When I first volunteered to write a blog about the Plant Wax 2015 conference, I thought I’d be writing about its relevance to the Global Plant Council’s stress resilience initiative. After all, the waxy coating (cuticle) that covers the aerial surfaces of plants is particularly important as a barrier against water loss and pathogens, while reflecting excess heat and UV radiation.

As it turns out, one of the most important lessons I learned from the meeting was a reminder of the powerful synergy that can happen when people with radically different goals and approaches get together to share ideas.

Water drops on a leaf

Plants are coated with a hydrophobic waxy covering known as a cuticle. Image credit: Adrian Scottow. Licensed under: CC BY-SA 2.0.

A meeting of two worlds

Biologists are from Venus, organic geochemists are from Mars

In the run up to the meeting, held 16–19 June 2015 in beautiful Ascona, Switzerland, I realized that the majority of speakers and delegates were organic geochemists, rather than plant scientists like myself. Other than brief discussions with the academics in the University of Bristol’s School of Chemistry I hadn’t had much interaction with this area of research, so didn’t really know what to expect.

Plant biologists are interested in cuticular waxes because of their impact on the physiology of the plant. The cuticle is composed of many different types of compounds, including alkanes, alcohols, aldehydes, ketones and esters, to say nothing of the more complicated compounds I learnt about at the conference (triterpenoids, anyone?). Each compound gives the wax certain characteristics, making it more suited to a particular environment, or to enhancing a particular function. Many of these changes, however, are yet to be fully understood.

 

The structure of the cuticle

The cuticle is formed of hydrophobic wax compounds on a scaffold of cutin (a polyester polymer), topped with a layer comprising only wax. Image credit: Yeats and Rose, 2013. Plant Physiology.

 

Organic geochemists, on the other hand, extract plant waxes from soils, sediments and rocks and analyze them as an integrated signal to cleverly reconstruct past climates. They typically investigate n-alkanes, the simplest straight-chain compounds found in waxes, which are least likely to break down over time. Amazingly, they can look at the ratio of deuterium (heavy hydrogen, 2H) to normal hydrogen (1H) in the n-alkanes to work out the plants’ source of water, or the ratio of 13C to 12C to work out whether the majority of plants at that time were using C3 or C4 photosynthesis.

The Plant Wax conference was organized to try and bring these two very different groups together, encouraging communication and crossover between research fields, and specifically, to answer the question: what could we learn from each other?

 

Leaf fossil

Plant waxes can be preserved in fossils, but organic geochemists typically look at sediments and sedimentary rocks. Image credit: James St. John. Licensed under CC BY 2.0.

Interdisciplinary cooperation

At the start of the conference, I don’t think the majority of biologists had much knowledge of the finer details of organic geochemistry. Likewise, many geochemists said they only had a general overview understanding of wax biosynthesis and plant physiology. The two fields have very little crossover in the scientific literature.

Since geologists’ isotope studies are based on generalizations made from modern biological studies in a few plant species, the geologists had several requests for biologists. Firstly, to improve climate reconstructions, they asked for more biological data!

The geochemists asked the biologists whether there was anything they could help us with. It was quite hard for me to imagine how their methods – environmental reconstructions of the past based on biological studies – could help us with modern plant biology.

In fact, I felt a little smug. I’d been feeling decidedly ignorant while hearing about ingenious geochemistry research, so I almost felt vindicated: did they need us more than we needed them?

It wasn’t until the last day of the conference that I realized just how wrong I was.

Dr Nikolai Pedentchouk

Dr Nikolai Pedentchouk

One of the last talks was by Dr Nikolai Pedentchouk, University of East Anglia, UK. He’s a collaborator of Amelia Frizell-Armitage, my fellow Global Plant Council New Media Fellow, and works on wheat waxes from an organic geochemist’s perspective.

Nikolai described his research into carbon and hydrogen isotopes in the waxy compounds of glaucous (dull blue-ish grey wax) versus non-glaucous (glossy green) wheat: “I used a field set-up to investigate several issues that are of interest to palaeoecologists and palaeoclimatologists and potentially to plant biochemists. We really wanted to know whether differences in leaf wax composition or amount resulted in differences in the isotope values of individual compound classes”.

How could this isotope research be useful to biologists? Amazingly, it could be used to elucidate the biosynthetic pathways for the different compounds in wheat wax – something that has so far not been possible using standard biological techniques.

“When plants synthesize organic compounds they fractionate stable isotopes, for example 13C vs. 12C and 2H vs. 1H. By measuring the isotopic composition of individual compound classes we could potentially reconstruct the order of reactions that could have led to the biosynthesis of a particular compound”, explained Nikolai.

Glaucous and non-glaucous wheat wax crystals

Wax crystals of glaucous (dull blue-ish grey) and non-glaucous (glossy) wheat wax crystals, taken on a scanning electron microscope. Image credit: Amelia Frizell-Armitage.

New perspectives

Nikolai’s application of geochemical techniques to solve a biological problem really opened my eyes to the innovations that can be made when people from vastly different research backgrounds work together and share ideas. Whether its using quantum mechanics to improve our understanding of photosynthesis, or chemical and computational modeling to advance synthetic biology, interdisciplinary collaboration is driving plant science research forwards, and I encourage you all to think outside your research box too!

“So what does the Global Plant Council actually do?” – SEB Prague 2015

By | ASPB, Blog, GPC Community, Scientific Meetings, SEB

Dobrý den!

 View across the Vltava river of Prague's Old Town and the Charles Bridge.


View across the Vltava river of Prague’s Old Town and the Charles Bridge.

Last week I attended the Society for Experimental Biology (SEB)’s Annual Main Meeting in the wonderful city of Prague in the Czech Republic.

Armed with a banner, a new batch of hot-off-the-press leaflets, some of our infamous GPC recycled paper pens, and a map of the world, the purpose of my trip was to staff an exhibitor’s booth at the conference to help raise awareness of the GPC and the projects and initiatives we are involved with.

2015-07-03 09.50.14To encourage delegates to speak to the exhibitors, there was a chance to win prizes in exchange for a ‘passport’ filled with stickers or stamps collected from each of the booths. This gave me a fantastic opportunity to meet people from all over the world and tell them about the Global Plant Council – even the SEB’s Animal and Cell biologists!

Many visitors to the booth were from Europe, but I also met people from as far away as Argentina, Australia, China and Vietnam. Thanks to everyone who visited the booth and gave me their email addresses to sign up for our monthly e-Bulletin newsletter!

“So what does the Global Plant Council actually do?”

This was the question I was most frequently asked at the conference. The answer is: many things! But to simplify matters, our overall remit falls into two main areas.

1) Enabling better plant science

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Visitors to our booth at SEB 2015 were asked to put their plant science on the map!

Plant science has a critical role to play in meeting global challenges such as food security, hunger and malnutrition. The GPC currently has 29 member organizations, including the SEB, representing over 55,000 plant, crop, agricultural and environmental scientists around the world. By bringing these professional organizations together under a united global banner, we have a stronger voice to help influence and shape policy and decision-making at the global level.  Our Executive Board and member organization representatives meet regularly and feed into international discussions and consultations.

The GPC also aims to facilitate more effective and efficient plant-based scientific research. Practically speaking, this means we organize, promote, provide support for, and assist with internationally collaborative projects and events. A good example is the Stress Resilience Symposium and Discussion Forum we are hosting, together with the SEB, in Brazil in October.

This meeting – which will be a satellite meeting of the International Plant Molecular Biology 2015 conference – will bring together scientists from across the world who are studying the mechanisms by which plants interact with and respond to their environments, particularly in the face of climate change. It will provide an excellent opportunity for researchers of all levels and from different regions to network and learn from each other, fostering new relationships and collaborations across borders. Registration and abstract submission is now open, so why not come along!

Importantly, as well as learning from researchers all over the world about the fantastic research they are doing, we also want to identify important research that is not being done, or which could be done better. Then, we can come together to discuss strategies to fund and fill these gaps.

You can find out more about our other current initiatives by going to our website.

2) Enabling better plant scientists

2015-07-03 12.42.41As well as physically bringing people together at meetings and events, the Global Plant Council aims to better connect plant scientists from around the world, promote plant research and funding opportunities, share knowledge and best practice, and identify reports, research tools, and educational resources.

Plant scientists have created an amazing diversity of assets for research and education, so by facilitating access to and encouraging use of these resources, we hope that a desperately needed new generation of plant researchers will be inspired to continue working towards alleviating some of the world’s most pressing problems. For example, we’re translating plant science teaching materials into languages other than English, and are helping the American Society of Plant Biologists to curate content for Plantae.org, an online resource hub and gathering place for the plant science community that will be launched later this year – stay tuned!

My #SEBSelfie! Other updates from the meeting can be found by following the hashtag #SEBAMM on Twitter.

My #SEBSelfie! Other updates from the meeting can be found by following the hashtag #SEBAMM on Twitter.

In addition, the GPC website is full of useful information including research and funding news, an events calendar, reports and white papers, fellowships and awards. We operate a Twitter account (@GlobalPlantGPC) for up-to-the-minute news and views, and a Spanish version @GPC_EnEspanol. We also have a blog (obviously!) that is regularly updated with interesting and informative articles written by the GPC staff, our two New Media Fellows, and plant scientists from across our member network. A Facebook page will be coming soon!

If you would like any more information about the projects and initiatives mentioned here, or more details about the GPC’s work, please do contact me (Lisa Martin, Outreach & Communications Manager): lisa@globalplantcouncil.org.