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food security Archives - The Global Plant Council

EXPERT REACTION: Global food sustainability needed to avoid catastrophic damage to the planet (The Lancet*)

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Back in the 1960s, when the Green Revolution started, the need was to provide calories for a starving world. Today, food is cheap. But it comes at great environmental cost. Climate change and the need to feed an ever-growing world population in a healthy way without ruining the natural environment are inextricably linked. It’s hard to see how to solve such “wicked problems”. The authors show that a dramatic change in the human diet could make a huge difference.

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State of the art research meets breeding for wheat’s future

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By Mathew ReynoldsWheat Physiologist atCIMMYT 

First post of our “Global Collaboration” series

Wheat is the most widely grown crop in the world, currently providing about 20 percent of human calorie consumption.  However, demand is predicted to increase by 60 percent within just 30 years, while long-term climate trends threaten to reduce wheat productivity, especially in less developed countries.  

CIMMYT, HeDWIC and IWYP

For over half a century, the International Wheat Improvement Network (IWIN), coordinated by CIMMYT, has been a global leader in breeding and disseminating improved wheat varieties to combat this problem, with a major focus on the constraints of resource poor farmers.

Ravi Singh presents rust resistance wheat trials to SAGARPA officials. Ciudad Obregon, Mexico 2017. Credit: CIMMYT/Alfonso Cortés

Two complementary networks — the Heat and Drought Wheat Improvement Consortium (HeDWIC) and the International Wheat Yield Partnership (IWYP) — are helping to meet the future demand for wheat consumption through global collaboration and technological partnership.

By harnessing the latest technologies in crop physiology, genetics and breeding, network researchers support the development of new varieties that aim to be more climate resilient, in the case of HeDWIC and with higher yield potential, in the case of IWYP

Novel approaches

These novel approaches to collaboration take wheat research from the theoretical to the practical and incorporate science into real-life breeding scenarios.  Methods such as screening genetic resources for physiological traits related to radiation use efficiency and identifying common genetic bases for heat and drought adaptation are leading to more precise breeding strategies and more data for models of genotype-by-environment interaction that help build new plant types and experimental environments for future climates.

IWYP addresses the challenge of raising the genetic wheat yield potential of wheat by up to 50 percent in the next two decades. Achieving this goal requires a strategic and collaborative approach to enable the best scientific teams from across the globe to work together in an integrated program. TheIWYP model of collaboration fosters linkages between ongoing research platforms to develop a cohesive portfolio of activities that maximizes the probability of impact in farmers’ fields IWYP research uses genomic selection to complement the crossing of complex traits by identifying favorable allele combinations among progeny.  The resulting products are delivered to national wheat programs worldwide through the IWIN international nursery system.

Recently, IWYP research achieved genetic gains through the strategic crossing of biomass and harvest index — source and sink — an approach that also validates the feasibility of incorporating exotic germplasm into mainstream breeding efforts.

In the case of HeDWIC, intensified — and possibly new — breeding strategies are needed to improve the yield potential of wheat in hotter and drier environments. This also requires a combined effort, using genetic diversity with physiological and molecular breeding and bioinformatic technologies, along with the adoption of improved agronomic practices by farmers. The approach already has proof of concept in the release and adoption of three heat and drought tolerant lines in Pakistan.

Next

It is imperative to build increased yield and climate-resilience to into future germplasm in order to avoid the risk of climate-related crop failure and to maintain global food security in a warmer climate. Partnerships like HeDWIC and IWYP give hope to meeting this urgent food security challenge.

 Further readings:

https://www.hedwic.org/resources.htm

https://royalsocietypublishing.org/doi/full/10.1098/rspb.2012.2190

An economist’s perspective on plant sciences: Under-appreciated, over-regulated and under-funded

An economist’s perspective on plant sciences: Under-appreciated, over-regulated and under-funded

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David Zilberman

Modified crops such as Golden Rice could have major benefits for people in developing nations. Image credit: IRRI Licensed under CC BY 2.0

By David Zilberman, Professor and Robinson Chair, Agriculture and Resource Economics, UC Berkeley

When I started working on agronomical issues in the 1970s, the most exciting technologies were related to water, machinery, and harvesting. Plant genetics seemed to be quite a boring enterprise. But as I became familiar with the Green Revolution, I realized the importance of plant research, and that the golden rule in agriculture is to find the optimal mixture between biotic and abiotic technologies. As an economist working on technology, I started to realize that the past fifty years have drastically changed the way plant sciences are done, and the potential and value of their product.

The discovery of the innerworkings of a cell, combined with the power of computers and precision tools, has changed medicine, but it has perhaps the potential to make an even bigger impact on plant sciences and agriculture. I have been working on the economics and policy aspects of agricultural biotechnology (see also Journal of Economic Perspectives).  Despite the restrictions on genetically modified varieties, they increase yields and make food more affordable for the poor. They also reduce greenhouse gas emissions and actually improved human health (by reducing exposure to chemicals and aflatoxin). But biotechnologies have had limited impact because of regulations that limit their use mostly to feed and fiber crops, and the practical ban on use of GMOs in Europe and parts of Africa.

It’s clear that developing countries can be the major beneficiaries of these technologies. They can save billions of dollars and address severe health and malnourishment problems. Furthermore, applications of biotechnology on food crops can reduce food security problems and increase access to valuable fresh produce throughout the world. Modern biotechnology can provide tools to accelerate adaptation to climate change, and I am surprised that some of the organizations most aware of climate change don’t recognize the value of biotechnology to address it.

Plant science research has already made major achievements using traditional and advanced tools to provide better varieties and improve the global food situation in a world with a fast growing population. There is a large body of literature documenting the rate of return of research, and much of the achievements have been the development of new varieties. The literature suggests that public research that provided much of the benefit has been underfunded, and its funding is declining. Thus, plant research hasn’t reached its potential.

Thus far, applied research in plant sciences at many universities concentrate on grasses, like corn and wheat, but underemphasize trees and algae. One explanation to the emphasis on grasses is the immediate economic benefits they seem to provide. With all the modern tools of biology, the big challenges and some of the most radical and relevant knowledge can come from the study of trees and algae within the context of forest and oceans. Studies of these specimens will enhance our understanding of living systems, is crucially important from a macro-ecological perspective, and from a practical perspective of finding new materials, new foods and efficient sources of energy.

Poplar is one of the most commonly used trees in plant science research. Image credit: Walter Siegmund 

I believe that society tends to underinvest in plant sciences, both because science is underfunded in general and because of the regulations of biotechnology that limit their use, as mentioned above. The contribution of plant scientists to address problems of climate change, deforestation, food security, and environmental quality are under-emphasized and under-recognized. This leads to less investment in this area, less contribution, and less student interest. But more investment in plant sciences may provide better understanding of their impact and how to regulate them, and provide more promising applications. So we are in a vicious cycle of over-regulation and under-funding that mostly hurt regions and populations that are vulnerable, and reduce our capabilities to deal with global changes.

To move forward, we need to have more enlightened regulations that will allow us to take advantage of this incredible science and big jolts in terms of support for research in plant sciences. Enlightened regulations would balance benefits and risks, reduce the cost of access to modern biotechnologies. They also would allow efficient and mutually beneficial transfer of knowledge and genetic materials across locations. Plant sciences is one discipline where the distribution of efforts across locations globally can be especially beneficial as we can learn about the performance of plant systems throughout the world. Therefore, investments in plant sciences should be distributed globally. For example, a major effort to raise funding for 100 Chairs of Plant Sciences around the world, especially in developing countries, will be a good start. It should be associated with support for student research, as well as forums the exchange of new ideas. And finally, new investments in arboretums and greenhouses.

Plant sciences have been providing humanity essential knowledge that enabled the growth and evolution of human civilization without much fanfare. New tools increase its potential and the excitement and value of research in these areas. Society needs to expand their support to plant sciences to enable it to flourish around the world, as well as enlightened regulation to gain benefits from the fruits of this research.

Reflections from the “Feed the Future” conference in Burkina Faso

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By Atsuko Kanazawa, Igor Houwat, Cynthia Donovan

This article is reposted with permission from the Michigan State University team. You can find the original post here: MSU-DOE Plant Research Laboratory

By Atsuko Kanazawa

Atsuko Kanazawa is a plant scientist in the lab of David Kramer. Her main focus is on understanding the basics of photosynthesis, the process by which plants capture solar energy to generate our planet’s food supply.

This type of research has implications beyond academia, however, and the Kramer lab is using their knowledge, in addition to new technologies developed in their labs, to help farmers improve land management practices.

One component of the lab’s outreach efforts is its participation in the Legume Innovation Lab (LIL) at Michigan State University, a program which contributes to food security and economic growth in developing countries in Sub-Saharan Africa and Latin America.

Atsuko recently joined a contingent that attended a LIL conference in Burkina Faso to discuss legume management with scientists from West Africa, Central America, Haiti, and the US. The experience was an eye opener, to say the least.

To understand some of the challenges faced by farmers in Africa, take a look at this picture, Atsuko says.

“When we look at corn fields in the Midwest, the corn stalks grow uniformly and are usually about the same height,” Atsuko says. “As you can see in this photo from Burkina Faso, their growth is not even.”

“Soil scientists tell us that much farmland in Africa suffers from poor nutrient content. In fact, farmers sometimes rely on finding a spot of good growth where animals have happened to fertilize the soil.”

Even if local farmers understand their problems, they often find that the appropriate solutions are beyond their reach. For example, items like fertilizer and pesticides are very expensive to buy.

That is where USAID’s Feed the Future and LIL step in, bringing economists, educators, nutritionists, and scientists to work with local universities, institutions, and private organizations towards designing best practices that improve farming and nutrition.

Atsuko says, “LIL works with local populations to select the most suitable crops for local conditions, improve soil quality, and manage pests and diseases in financially and environmentally sustainable ways.”

Unearthing sources of protein

At the Burkina Faso conference, the Kramer lab reported how a team of US and Zambian researchers are mapping bean genes and identifying varieties that can sustainably grow in hot and drought conditions.

The team is relying on a new technology platform, called PhotosynQ, which has been designed and developed in the Kramer labs in Michigan.

PhotosynQ includes a hand-held instrument that can measure plant, soil, water, and environmental parameters. The device is relatively inexpensive and easy to use, which solves accessibility issues for communities with weak purchasing power.

The heart of PhotosynQ, however, is its open-source online platform, where users upload collected data so that it can be collaboratively analyzed among a community of 2400+ researchers, educators, and farmers from over 18 countries. The idea is to solve local problems through global collaboration.

Atsuko notes that the Zambia project’s focus on beans is part of the larger context under which USAID and LIL are functioning.

“From what I was told by other scientists, protein availability in diets tends to be a problem in developing countries, and that particularly affects children’s development,” Atsuko says. “Beans are cheaper than meat, and they are a good source of protein. Introducing high quality beans aims to improve nutrition quality.”

Science alone is sometimes not enough

But, as LIL has found, good science and relationships don’t necessarily translate into new crops being embraced by local communities.

Farmers might be reluctant to try a new variety, because they don’t know how well it will perform or if it will cook well or taste good. They also worry that if a new crop is popular, they won’t have ready access to seed quantities that meet demand.

Sometimes, as Atsuko learned at the conference, the issue goes beyond farming or nutrition considerations. In one instance, local West African communities were reluctant to try out a bean variety suggested by LIL and its partners.

The issue was its color.

“One scientist reported that during a recent famine, West African countries imported cowpeas from their neighbors, and those beans had a similar color to the variety LIL was suggesting. So the reluctance was related to a memory from a bad time.”

This particular story does have a happy ending. LIL and the Burkina Faso governmental research agency, INERA, eventually suggested two varieties of cowpeas that were embraced by farmers. Their given names best translate as, “Hope,” and “Money,” perhaps as anticipation of the good life to come.

Another fruitful, perhaps more direct, approach of working with local communities has been supporting women-run cowpea seed and grain farms. These ventures are partnerships between LIL, the national research institute, private institutions, and Burkina Faso’s state and local governments.

Atsuko and other conference attendees visited two of these farms in person. The Women’s Association Yiye in Lago is a particularly impressive success story. Operating since 2009, it now includes 360 associated producing and processing groups, involving 5642 women and 40 men.

“They have been very active,” Atsuko remarks. “You name it: soil management, bean quality management, pest and disease control, and overall economic management, all these have been implemented by this consortium in a methodical fashion.”

“One of the local farm managers told our visiting group that their crop is wonderful, with high yield and good nutrition quality. Children are growing well, and their families can send them to good schools.”

As the numbers indicate, women are the main force behind the success. The reason is that, usually, men don’t do the fieldwork on cowpeas. “But that local farm manager said that now the farm is very successful, men were going to have to work harder and pitch in!”

Back in Michigan, Atsuko is back to the lab bench to continue her photosynthesis research. She still thinks about her Burkina Faso trip, especially how her participation in LIL’s collaborative framework facilitates the work she and her colleagues pursue in West Africa and other parts of the continent.

“We are very lucky to have technologies and knowledge that can be adapted by working with local populations. We ask them to tell us what they need, because they know what the real problems are, and then we jointly try to come up with tailored solutions.”

“It is a successful model, and I feel we are very privileged to be a part of our collaborators’ lives.”

This article is reposted with permission from the Michigan State University team. You can find the original post here: MSU-DOE Plant Research Laboratory

Taking the brakes off plant production: not so good after all

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Reposted with kind permission from the MSU-DOE Plant Research Laboratory. Original article.

By: Igor Houwat, Atsuko Kanazawa, David Kramer

The need for speed: increasing plant yield is one way to increase food and fuel resources. But asking plants to simply do more of the usual is a strategy that can backfire. Photo by Romain Peli on Unsplash

When engineers want to speed something up, they look for the “pinch points”, the slowest steps in a system, and make them faster.

Say, you want more water to flow through your plumbing. You’d find the narrowest pipe and replace it with a bigger one.

Many labs are attempting this method with  photosynthesis, the process that plants and algae use to capture solar energy.

All of our food and most of our fuels have come from photosynthesis. As our population increases, we need more food and fuel, requiring that we improve the efficiency of photosynthesis.

But, Dr. Atsuko Kanazawa and the Kramer Lab are finding that, for biological systems, the “pinch point” method can potentially do more harm than good, because the pinch points are there for a reason!  So, how can this be done?

 

ATP synthase: an amazing biological nanomachine

Atsuko and her colleagues at the MSU-DOE Plant Research Laboratory (PRL) have been working on this problem for over 15 years. They have focused on a tiny machine in the  chloroplast called the  ATP synthase, a complex of proteins essential to storing solar energy in “high energy molecules” that power life on Earth.

That same ATP molecule and a very similar ATP synthase are both used by animals, including humans, to grow, maintain health, and move.

In plants, the ATP synthase happens to be one of the slowest process in photosynthesis, often limiting the amount of energy plants can store.

Photosynthetic systems trap sunlight energy that starts the reaction to move electrons forward in an assembly-line fashion to make useful energy compounds. The ATP synthase is one of the “pinch points” that slows the flow as needed, so plants stay healthy. In cfq, the absence of feedback leads to an electron pile up at PSI, and a crashed system. By MSU-DOE Plant Research Laboratory, except tornado graphic/CC0 Creative Commons

 

Kicking up the gears of plant production

Atsuko thought, if the ATP synthase is such an important pinch point, what happens if it were faster? Would it be better at photosynthesis and give us faster growing plants?

Years ago, she got her hands on a mutant plant, called cfq, from a colleague. “It had an ATP synthase that worked non-stop, without slowing down, which was a curious example to investigate. In fact, under controlled laboratory conditions – very mild and steady light, temperature, and water conditions – this mutant plant grew bigger than its wild cousin.”

But when the researchers grew the plant under the more varied conditions it experiences in real life, it suffered serious damage, nearly dying.

“In nature, light and temperature quality change all the time, whether through the passing hours, or the presence of cloud cover or winds that blow through the leaves,” she says.

 

Plants slow photosynthesis for a reason!

Recent innovations from the Kramer lab are enabling Atusko and her colleagues to probe into how real environmental conditions affect plant growth.

Atsuko’s research now shows that the slowness of the ATP synthase is not an accident; it’s an important braking mechanism that prevents photosynthesis from producing harmful chemicals, called reactive oxygen species, which can damage or kill the plant.

“It turns out that sunlight can be damaging to plants,” says Dave Kramer, Hannah Distinguished Professor and lead investigator in the Kramer lab.

“When plants cannot use the light energy they are capturing, photosynthesis backs up and toxic chemicals accumulate, potentially destroying parts of the photosynthetic system. It is especially dangerous when light and other conditions, like temperature, change rapidly.”

“We need to figure out how the plant presses on the brakes and tune it so that it responds faster…”

The ATP synthase senses these changes and slows down light capture to prevent damage. In that light, the cfqmutant’s fast ATP is a bad idea for the plant’s well-being.

“It’s as if I promised to make your car run faster by removing the brakes. In fact, it would work, but only for a short while. Then things go very wrong!” Dave says.

“In order to improve photosynthesis, what we need is not to remove the brakes completely, like in cfq, but to control them better,” Dave says. “Specifically, we need to figure out how the plant presses on the brakes and tune it so that it responds faster and more efficiently,” David says.

Atsuko adds: “Scientists are trying different methods to improve photosynthesis. Ultimately, we all want to tackle some long-term problems. Crucially, we need to continue feeding the Earth’s population, which is exploding in size.”

The study is published in the journal, Frontiers in Plant Science.

 

The Regulator’s perspective: Why some gene-edited plants are not GM-regulated in Sweden

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Staffan Eklof

Dr. Staffan Eklöf, Swedish Board of Agriculture

At July’s New Breeding Technologies workshop held in Gothenburg, Sweden, Dr. Staffan Eklöf, Swedish Board of Agriculture, gave us an insight into their analysis of European Union (EU) regulations, which led to their interpretation that some gene-edited plants are not regulated as genetically modified organisms. We speak to him here on the blog to share the story with you.

Could you begin with a brief explanation of your job, and the role of the Competent Authority for GM Plants / Swedish Board of Agriculture?

I am an administrative officer at the Swedish Board of Agriculture (SBA). The SBA is the Swedish Competent authority for most GM plants and ensures that EU regulations and national laws regarding these plants are followed. This includes issuing permits.

You reached a key decision on the regulation of some types of CRISPR-Cas9 gene-edited plants. Before we get to that, could you start by explaining what led your team to start working on this issue?

It started when we received questions from two universities about whether they needed to apply for permission to undertake field trials with some plant lines modified using CRISPR/Cas9. The underlying question was whether these plants are included in the gene technology directive or not. According to the Swedish service obligation for authorities, the SBA had to deliver an answer, and thus had to interpret the directive on this point.

Arabidopsis thaliana

Image credit: INRA, Jean Weber. Used under license: CC BY 2.0.

Could you give a brief overview of Sweden’s analysis of the current EU regulations that led to your interpretation that some CRISPR-Cas9 gene-edited plants are not covered by this legislation?

The following simplification describes our interpretation pretty well; if there is foreign DNA in the plants in question, they are regulated. If not, they are not regulated.

Our interpretation touches on issues such as what is a mutation and what is a hybrid nucleic acid. The first issue is currently under analysis in the European Court of Justice. Other ongoing initiatives in the EU may also change the interpretations we made in the future, as the directive is common for all member states in the EU.

CRISPR-Cas9 is a powerful tool that can result in plants with no trace of transgenic material, so it is impossible to tell whether a particular mutation is natural. How did this influence your interpretation?

We based our interpretation on the legal text. The fact that one cannot tell if a plant without foreign DNA is the progeny of a plant that carried foreign DNA or the result of natural mutation strengthened the position that foreign DNA in previous generations should not be an issue. It is the plant in question that should be the matter for analysis.

Arabidopsis thaliana

Image credit: Frost Museum. Used under license: CC BY 2.0.

Does your interpretation apply to all plants generated using CRISPR-Cas9, or a subset of them?

It applies to a subset of these gene-edited plants. CRISPR/Cas9 is a tool that can be used in many different ways. Plants carrying foreign DNA are still regulated, according to our interpretation.

What does your interpretation mean for researchers working on CRISPR-Cas9, or farmers who would like to grow gene-edited crops in Sweden?

It is important to note that, with this interpretation, we don’t remove the responsibility of Swedish users to assess whether or not their specific plants are included in the EU directive. We can only tell them how we interpret the directive and what we request from the users in Sweden. Eventually I think there will be EU-wide guidelines on this matter. I should add that our interpretation is also limited to the types of CRISPR-modified plants described in the letters from the two universities.

Crops

Will gene-edited crops be grown in Europe in the future? Image credit: Richard Beatson. Used under license: CC BY 2.0.

We are currently waiting for the EU to declare whether CRISPR-Cas9 gene-edited plants will be regulated in Europe. Have policymakers in other European countries been in contact with you regarding Sweden’s decision process?

Yes, there is a clear interest; for example, Finland handled a very similar case. Other European colleagues have also shown an interest.

What message would you like plant scientists to take away from this interview? If you could help them to better understand one aspect of policymaking, what would it be?

Our interpretation is just an interpretation and as such, it is limited and can change as a result of what happens; for example, what does not require permission today may do tomorrow. Bear this in mind when planning your research and if you are unsure, it is better to ask. Moreover, even if the SBA (or your country’s equivalent) can’t request any information about the cultivation of plants that are not regulated, it is good to keep us informed.

I think it is vital that legislation meets reality for any subject. It is therefore good that pioneers drive us to deal with difficult questions.

Fighting Fusarium wilt to beat the bananapocalypse

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Dr. Sarah Schmidt (@BananarootsBlog), Researcher and Science Communicator at The Sainsbury Laboratory Science. Sarah got hooked on both banana research and science writing when she joined a banana Fusarium wilt field trip in Indonesia as a Fusarium expert. She began blogging at https://bananaroots.wordpress.com and just filmed her first science video. She speaks at public events like the Pint of Science and Norwich Science Festival.

 

Every morning I slice a banana onto my breakfast cereal.

And I am not alone.

Every person in the UK eats, on average, 100 bananas per year.

Bananas are rich in fiber, vitamins, and minerals like potassium and magnesium. Their high carbohydrate and potassium content makes them a favorite snack for professional sports players; the sugar provides energy and the potassium protects the players from muscle fatigue. Every year, around 5000 kg of bananas are consumed by tennis players at Wimbledon.

But bananas are not only delicious snacks and handy energy kicks. For around 100 million people in Sub-Saharan Africa, bananas are staple crops vital for food security. Staple crops are those foods that constitute the dominant portion of a standard diet and supply the major daily calorie intake. In the UK, the staple crop is wheat. We eat wheat-based products for breakfast (toast, cereals), lunch (sandwich), and dinner (pasta, pizza, beer).

In Uganda, bananas are staple crops. Every Ugandan eats 240 kg bananas per year. That is around 7–8 bananas per day. Ugandans do not only eat the sweet dessert banana that we know; in the East African countries such as Kenya, Burundi, Rwanda, and Uganda, the East African Highland banana, called Matooke, is the preferred banana for cooking. Highland bananas are large and starchy, and are harvested green. They can be cooked, fried, boiled, or even brewed into beer, so have very similar uses wheat in the UK.

In West Africa and many Middle and South American countries, another cooking banana, the plantain, is cooked and fried as a staple crop.

In terms of production, the sweet dessert banana we buy in supermarkets is still the most popular. This banana variety is called Cavendish and makes up 47% of the world’s banana production, followed by Highland bananas (24%) and plantains (17%). Last year, I visited Uganda and I managed to combine the top three banana cultivars in one dish: cooked and mashed Matooke, a fried plantain and a local sweet dessert banana!

 

Three types of banana in a single dish in Uganda.

Another important banana cultivar is the sweet dessert banana cultivar Gros Michel, which constitutes 12% of the global production. Gros Michel used to be the most popular banana cultivar worldwide until an epidemic of Fusarium wilt disease devastated the banana export plantations in the so-called “banana republics” in Middle America (Panama, Honduras, Guatemala, Costa Rica) in the 1950s.

Fusarium wilt disease is caused by the soil-borne fungus Fusarium oxysporum f. sp. cubense (FOC). The fungus infects the roots of the banana plants and grows up through the water-conducting, vascular system of the plant. Eventually, this blocks the water transport of the plant and the banana plants start wilting before they can set fruits.

Fusarium Wilt symptoms

Fusarium Wilt symptoms

The Fusarium wilt epidemic in Middle America marked the rise of the Cavendish, the only cultivar that could be grown on soils infested with FOC. The fact that they are also the highest yielding banana cultivar quickly made Cavendish the most popular banana variety, both for export and for local consumption.

Currently, Fusarium wilt is once again the biggest threat to worldwide banana production. In the 1990s, a new race of Fusarium wilt – called Tropical Race 4 (TR4) – occurred in Cavendish plantations in Indonesia and Malaysia. Since then, TR4 has spread to the neighboring countries (Taiwan, the Philippines, China, and Australia), but also to distant locations such as Pakistan, Oman, Jordan, and Mozambique.

Current presence of Fusarium wilt Tropical Race 4. Affected countries are colored in red.

In Mozambique, the losses incurred by TR4 amounted to USD 7.5 million within just two years. Other countries suffer even more; TR4 causes annual economic losses of around USD 14 million in Malaysia, USD 121 million in Indonesia, and in Taiwan the annual losses amount to a whopping USD 253 million.

TR4 is not only diminishing harvests. It also raises the price of production, because producers have to implement expensive preventative measures and treatments of affected plantations. These preventive measures and treatments are part of the discussion at The World Banana Forum (WBF). The WBF is a permanent platform for all stakeholders of the banana supply chain, and is housed by the United Nation’s Food and Agricultural Organization (FAO). In December 2013, the WBF created a special taskforce to deal with the threat posed by TR4.

Despite its massive impact on banana production, we know very little about the pathogen that is causing Fusarium wilt disease. We don’t know how it spreads, why the new TR4 is so aggressive, or how we can stop it.

Fusarium Wilt symptom

Fusarium Wilt symptoms in the discolored banana corm.

Breeding bananas is incredibly tedious, because edible cultivars are sterile and do not produce seeds. I am therefore exploring other ways to engineer resistance in banana against Fusarium wilt. As a scientist in the 2Blades group at The Sainsbury Laboratory, I am investigating how we can transfer resistance genes from other crop species into banana and, more recently, I have been investigating bacteria that are able to inhibit the growth and sporulation of F. oxysporum. These biologicals would be a fast and cost-effective way of preventing or even curing Fusarium wilt disease.

 

Twitter:           @BananarootsBlog

Email:              mailto:sarah.schmidt@tsl.ac.uk

Website:          https://bananaroots.wordpress.com

Brazil’s transgenic sugarcane stirs up controversy

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By Luisa Massarani

This article was originally published on SciDev.Net. Read the original article.

[RIO DE JANEIRO] A genetically modified (GM) cane variety that can kill the sugarcane borer (Diatraea saccharalis) has been approved in Brazil,  to the delight of some scientists and the dismay of others, who say it may threaten Brazilian biodiversity.

Brazil is the second country, after Indonesia, to approve the commercial cultivation of GM sugarcane. The approval was announced by the Brazilian National Biosafety Technical Commission (CTNBio) on June 8.

Sugarcane borer is one of the main pests of the sugarcane fields of South-Central Brazil, causing losses of approximately US$1.5 billion per year.

“Breeding programmes could not produce plants resistant to this pest, and the existing chemical controls are both not effective and severely damaging to the environment,” says Adriana Hemerly, a professor at the Federal University of Rio de Janeiro, in an interview with SciDev.Net.

“Studies conducted outside Brazil prove that protein from genetically modified organisms harms non-target insects, soil fauna and microorganisms.”

Rogério Magalhães

“Therefore, the [GM variety] is a biotechnological tool that helps solve a problem that other technologies could not, and its commercial application will certainly have a positive impact on the productivity of sugarcane in the country.”

Jesus Aparecido Ferro, a member of CTNBio and professor at the Paulista Júlio de Mesquita Filho State University, believes the move followed a thorough debate that began in December 2015 — that was when the Canavieira Technology Center (Sugarcane Research Center) asked for approval to commercially cultivate the GM sugarcane variety.

“The data does not provide evidence that the cane variety has a potential to harm the environment or human or animal health,” Ferro told SciDev.Net.

To develop the variety, scientists inserted the gene for a toxin [Cry] from the bacterium Bacillus thuringiensis (Bt) into the sugarcane genome, so it could produce its own insecticide against some insects’ larvae.

This is a technology that “has been in use for 20 years and is very safe”, says Aníbal Eugênio Vercesi, another member of the CTNBio, and a professor at the State University of Campinas.

But Valério De Patta Pillar, also a member of the CTNBio and a professor at the Federal University of Rio Grande do Sul, points to deficiencies in environmental risk assessment studies for the GM variety — and the absence of assessments of how consuming it might affect humans and animals.

According to Pillar, there is a lack of data about the frequency with which it breeds with wild varieties. Data is also missing on issues such as the techniques used to create the GM variety and the effects of its widespread use.

Rogério Magalhães, an environmental analyst at Brazil’s Ministry of the Environment, also expressed concern about the approval of the commercial transgenic cane.

“I understand that studies related to the impacts that genetically modified sugarcane might have on Brazilian biodiversity were not done by the company that owns the technology,” said Magalhães in an interview with SciDev.Net. This is very important because Brazil’s climate, species, and soils differ from locations where studies might have taken place, he explained.

Among the risks that Magalhães identified is contamination of the GM variety’s wild relatives. “The wild relative, when contaminated with transgenic sugarcane, will have a competitive advantage over other uncontaminated individuals, as it will exhibit resistance to insect-plague that others will not have,” he explained.

Another risk that Magalhães warns about is damage to biodiversity. “Studies conducted outside Brazil prove that Cry protein from genetically modified organisms harms non-target insects, soil fauna and microorganisms.”

Magalhães added that some pests have already developed resistance to the Bt Cry protein, prompting farmers to apply agrochemicals that are harmful to the environment and human health.

This piece was originally published by SciDev.Net’s Latin America and Caribbean desk.

 

This article was originally published on SciDev.Net. Read the original article.

Rise in groundwater overuse could hit food prices

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By Neena Bhandari

[SYDNEY] The increasing use of groundwater for irrigation poses a major threat to global food security and could lead to unaffordable prices of staple foods. From 2000 to 2010, the amount of non-renewable groundwater used for irrigation increased by a quarter, according to an article published in Nature on March 30. During the same period China had doubled its groundwater use.

The article finds that 11 per cent of groundwater extraction for irrigation is linked to agricultural trade.

“In some regions, for example in Central California or North-West India, there is not enough precipitation or surface water available to grow crops like maize or rice and so farmers also use water from the underground to irrigate,” the article says.

“When a country imports US maize grown with this non-renewable water, it virtually imports non-renewable groundwater.”

Carole Dalin,  Institute for Sustainable Resources at University College, London

The article focused on cases where underground reservoirs or aquifers, are overused. “When a country imports US maize grown with this non-renewable water, it virtually imports non-renewable groundwater,” Carole Dalin, lead author and senior research fellow at the Institute for Sustainable Resources at University College, London, tells SciDev.Net.

Crops such as rice, wheat, cotton, maize, sugar crops and soybeans are most reliant on this unsustainable water use, according to the article. It lists countries in the Middle East and North Africa as well as China, India, Mexico, Pakistan and the US as most at risk.

“Pakistan and India have been locally most affected due to groundwater depletion and exporting agricultural products grown with non-sustainable groundwater. Iran is both exporting and importing and The Philippines is importing from Pakistan, which is non-sustainable. China is importing a lot from India. Japan and Indonesia are importing, mainly from the US,” says Yoshihide Wada, co-author of the report and deputy director of the International Institute for Applied Systems Analysis’s Water Programme, Laxenburg, Austria.

Agriculture is the leading user of groundwater, accounting for more than 80 to 90 per cent of withdrawals in irrigation-intense countries like India, Pakistan and Iran, according to the report.

The researchers say efforts to improve water use efficiency and develop monitoring and regulation need to be prioritised. Governments must invest in better irrigation infrastructure such as sprinkler irrigation and introduce new cultivar or crop rotation to help producers minimise water use.

Wada suggests creating awareness by putting water labels, along the lines of food labels, “showing how much water is used domestically and internationally in produce and whether these water amounts are from sustainable or non-sustainable sources”.

Andrew Western, professor of hydrology and water resources at the University of Melbourne’s School of Engineering, suggests enforceable water entitlement systems and caps on extraction. “In recent decades, water reform in Australia has led to water having a clear economic value made explicit by a water market. This has enabled shifts in water use to cope with short-term climate fluctuations and has also driven a trend of increasing water productivity,” he says.

This piece was produced by SciDev.Net’s Asia & Pacific desk.

 

This article was originally published on SciDev.Net. Read the original article.

Striga hermonthica – a beautiful but devastating plant…

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This week’s post was written by Caroline Wood, a PhD candidate at the University of Sheffield.

When it comes to crop diseases, insects, viruses, and fungi may get the media limelight but in certain regions it is actually other plants which are a farmer’s greatest enemy. In sub-Saharan Africa, one weed in particular – Striga hermonthica – is an almost unstoppable scourge and one of the main limiting factors for food security.

Striga is a parasitic plant; it attaches to and feeds off a host plant. For most of us, parasitic plants are simply harmless curiosities. Over 4,000 plants are known to have adopted a parasitic mode of life, including the seasonal favorite mistletoe (a stem parasite of conifers) and Rafflesia arnoldii, nicknamed the “corpse flower” for its huge, smelly blooms. Although the latter produces the world’s largest flower, it has no true roots – only thread-like structures that infect tropical vines.

When parasitic plants infect food crops, they can turn very nasty indeed. Striga hermonthica is particularly notorious because it infects almost every cereal crop, including rice, maize, and sorghum. Striga is a hemiparasite, meaning that it mainly withdraws water from the host (parasitic plants can also be holoparasites, which withdraw both water and carbon sugars from the host). However, Striga also causes a severe stunting effect on the host crop (see Figure 1), reducing their  yield to practically nothing. Little wonder then, that the common name for Striga is ‘witchweed’.

Striga-infected sorghum

Figure 1: Striga-infected sorghum. Note the withered, shrunken appearance of the infected plants. Image credit: Joel Ransom.

 

Several features of the Striga lifecycle make it especially difficult to control. The seeds can remain dormant for decades and only germinate in response to signals produced by the host root (called strigolactones) (Figure 2). Once farmland becomes infested with Striga seed, it becomes virtually useless for crop production. Germination and attachment takes place underground, so the farmer can’t tell if the land is infected until the parasite sends up shoots (with ironically beautiful purple flowers). Some chemical treatments can be effective but these remain too expensive for the subsistence farmers who are mostly affected by the weed. Many resort to simply pulling the shoots out as they appear; a time-consuming and labor-intensive process. It is estimated that Striga spp. cause crop losses of around US $10 billion each year [1].

Certain crop cultivars and their wild relatives show natural resistance to Striga. Here at the University of Sheffield, our lab group (headed by Professor Julie Scholes) is working to identify resistance genes in rice and maize, with the eventual aim of breeding these into high-yielding cultivars. To do this, we grow the host plants in rhizotrons (root observation chambers) which allow us to observe the process of Striga attachment and infection (see Figure 3). Already this has been successful in identifying rice cultivars that have broad-spectrum resistance to Striga, and which are now being used by farmers across Africa.

 

Life cycle of Striga

Figure 2: Life cycle of Striga spp. A single plant produces up to 100,000 seeds, which can remain viable in the soil for 20 years. Following a warm, moist conditioning phase, parasite seeds become responsive to chemical cues produced by the roots of suitable hosts, which cause them to germinate and attach to the host root. The parasite then develops a haustorium: an absorptive organ which penetrates the root and connects to the xylem vessels in the host’s vascular system. This fuels the development of the Striga shoots, which eventually emerge above ground and flower. Figure from [2].

 

 

But many fundamental aspects of the infection process remain almost a complete mystery, particularly how the parasite overcomes the host’s intrinsic defense systems. It is possible that Striga deliberately triggers certain host signaling pathways; a strategy used by other root pathogens such as the fungus Fusarium oxysporum. This is the focus of my project: to identify the key defense pathways that determine the level of host resistance to Striga. It would be very difficult to investigate this in crop plants, which typically have incredibly large genomes, so my model organism is Arabidopsis thaliana, the workhorse of the plant science world, whose genome has been fully sequenced and mapped. Arabidopsis cannot be infected by Striga hermonthica but it is susceptible to the related species, Striga gesnerioides, which normally infects cowpea.  I am currently working through a range of different Arabidopsis mutants, each affected in a certain defense pathway, to test whether these have an altered resistance to the parasite.  Once I have an idea of which plant defense hormones may be involved (such as salicylic acid or jasmonic acid), I plant to test the expression of candidate genes to decipher what is happening at the molecular level.

Striga-infected Arabidopsis

Figure 3: One of my Arabidopsis plants growing in a rhizotron. Preconditioned Striga seeds were applied to the roots three weeks ago with a paintbrush. Those that successfully attached and infected the host have now developed into haustoria. The number of haustoria indicates the level of resistance in the host. Image credit: Caroline Wood.

 

It’s early days yet, but I am excited by the prospect of shedding light on how these devastating weeds are so effective in breaking into their hosts. Ultimately this could lead to new ways of ‘priming’ host plants so that they are armed and ready when Striga attacks. It’s an ambitious challenge, and one that will certainly keep me going for the remaining two years of my PhD!

 

You can follow my journey by reading my blog and keeping up with me on Twitter (@sciencedestiny).

 

References:

[1] Westwood, J. H. et al. (2010). The evolution of parasitism in plants. Trends in Plant Science, 15(4): 227-235.

[2] Scholes, J. D. and Press, M. C. (2008). Striga infestation of cereal crops – an unsolved problem in resource limited agriculture. Current Opinion in Plant Biology, 11(2): 180-186.